19.0.0 MINERVA Release#

15 Jul 2025#

Backward incompatibility:#

• Copying annotations into complex children moved to a dedicated annotator
• Caching should be done in the background
• Annotations are performed asynchronously
• MiRNA search has been removed
• Degraded does not have a name
• Custom annotation validation on project upload removed
• Performance – when listing drugs for target don’t provide info about targetElements (too expensive)
• Downloading a map as an image does not accept a list of overlays anymore
• Performance – when listing chemicals for target, don’t query about chemical dataset releases for every chemical (too expensive)
  

Improvement:#

• New API
• Allow downloading generated ZIP
• Layers have images
• When exporting to SBML, provide annotation as identifiers.org uri
• Data overlay has a group name
• Pageable API allows to fetch max 10000 elements in single batch
• Configuration option for Matomo
• Layers called “text” are visible on the map
• Modification residues have text location
• Layers have z-index
• NON_MATCHING_ALPHA attribute to overlay
• Endpoint for redirecting miriam data to source
• List of blacklisted project ids added
• Ovals, rectangles and text have border thickness, and ovals have fill color
• Send error reports over zip
• Link to admin manual changed
• Drug target contains information about a source
• Support for matomo
• Overlays can be organized with groups
• Allow plugin to not have a panel
• Allow plugin to add a menu option to the context menu
• Allow plugin to access info about an opened panel
• Allow plugin to hide an opened panel
• Allow plugin to open a left panel
• Allow exporting the current view
• Allow downloading generated zip
• Allow users to reset their password
• Allow a user to change his/her data
• Explanation about export current view added
• Predefined colors in pickers
• Possibility to snap to grid when adding lines
• The comment icon changed
• Reaction element annotations use the same styling as elements
• Molart title contains protein name
• When adding comment, email is prefilled from user profile
• Styling of annotation links improved
• Styling of submap links improved
• Annotations are sorted alphabetically
• General overlays renamed to “Shared overlays”
• Downloading the current view image downloads what you see
• Performance improvement when checking for drugs/chemicals a targetting element

Fixed:#

• Article without a link caused map not to load properly
• Close drawer when opening submap from anchor
• Uploading too big glyph produce proper error message
• Disappearing layers fixed
• Results are sorted by number of hits
• Comments were indexed starting from 0 instead of 1
• Comment content is forced to wrap inside the box (for long comments without spaces)
• Submodels are sorted alphabetically
• “Pathways” layer should not appear in the list of layers
• Adding overlay with too big name caused issues
• Removing a project did not refresh the status
• Uploading too big files should return 400
• Problem with uploading generated zip
• Exporting a map with an image on the layer threw an exception
• Problem with generating zip when glyphs have been used multiple times
• Manual link in add project panel fixed
• Clear open tabs when opening add project dialog
• Text coordinates for multimer species are computed based on multimer value when importing from CellDesigner
• When removing a project, the layer texts/rectangles/ovals were not removed
• Index.html has been cached but should not
• Export to SBGN-ML could generate invalid notes node for the file
• On project upload weird errors appeared in logs