You are in the latest manual of
CellDesigner → SBOTerms matching list
Species
| CellDesigner terms | SBOTerm | SBOTerm name |
|---|---|---|
| Antisense Rna | SBO:0000334 | non-coding RNA |
| Complex | SBO:0000253 | non-covalent complex |
| Hypothetical complex | SBO:0000289 | functional compartment |
| Degraded | SBO:0000291 | empty set |
| Drug | SBO:0000298 | synthetic chemical compound |
| Gene | SBO:0000243 | gene |
| Generic protein | SBO:0000252 | polypeptide chain |
| Ion | SBO:0000327 | non-macromolecular ion |
| Ion channel | SBO:0000284 | transporter |
| Phenotype | SBO:0000358 | phenotype |
| Receptor | SBO:0000244 | receptor |
| Rna | SBO:0000278 | messenger RNA |
| Small molecule | SBO:0000247 | simple chemical |
| Truncated protein | SBO:0000252 | polypeptide chain |
| Unknown | SBO:0000285 | material entity of unspecified nature |
Modifiers
| CellDesigner terms | SBOTerm | SBOTerm name |
|---|---|---|
| Catalysis | SBO:0000013 | catalyst |
| Inhibition | SBO:0000537 | complete inhibitor |
| Modulation | SBO:0000594 | neutral participant |
| Physical stimulation | SBO:0000459 | stimulator |
| Trigger | SBO:0000461 | essential activator |
| Unknown catalysis | SBO:0000462 | non-essential activator |
| Unknown Inhibition | SBO:0000536 | partial inhibitor |
Reaction (process description)
| CellDesigner terms | SBOTerm | SBOTerm name |
|---|---|---|
| Dissociation | SBO:0000180 | dissociation |
| Heterodimer association | SBO:0000177 | non-covalent binding |
| Known transition omitted | SBO:0000395 | encapsulating process |
| State transition | SBO:0000176 | biochemical reaction |
| Transcription | SBO:0000183 | transcription |
| Translation | SBO:0000184 | translation |
| Transport | SBO:0000185 | translocation reaction |
| Truncation | SBO:0000178 | cleavage |
| Unknown transition | SBO:0000396 | uncertain process |
Reaction (activity flow)
| CellDesigner terms | SBOTerm | SBOTerm name |
|---|---|---|
| Negative influence | SBO:0000407 | absolute inhibition |
| Positive influence | SBO:0000171 | necessary stimulation |
| Reduced modulation | SBO:0000344 | molecular interaction |
| Reduced physical stimulation | SBO:0000411 | absolute stimulation |
| Reduced trigger | SBO:0000168 | control |
| Unknown negative influence | SBO:0000169 | inhibition |
| Unknown positive influence | SBO:0000172 | catalysis |
| Unknown reduced modulation | SBO:0000342 | molecular or genetic interaction |
| Unknown reduced physical stimulation | SBO:0000170 | stimulation |
| Unknown reduced trigger | SBO:0000205 | composite biochemical process |
Boolean logic gates
| CellDesigner terms | SBOTerm | SBOTerm name |
|---|---|---|
| Boolean Logic Gate And | SBO:0000173 | and |
| Boolean Logic Gate Or | SBO:0000174 | or |
| Boolean Logic Gate Not | SBO:0000238 | not |
| Boolean Logic Gate Unknown | SBO:0000398 | logical relationship |