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Example 8 - GPML mapping

This section explains how the MINERVA Platform handles GPML format. In the terms of creating the model, GPML format is less constricted than CellDesigner. Due to that, the MINERVA Platform converts GPML reactions which are not directly mirrored in CellDesigner (i.e. mim-binding reaction is displayed in MINERVA Platform as unknown transition).

Check out mapping between GPML and CellDesigner here.

WikiPathways model display

Here you can download exemplary WikiPathways model. You can upload it to the MINERVA Platform and compare display with original source at at wikipathways.
Below images present:

  • Model at WikiPathways WikiPathways model original

  • Model displayed in the MINERVA Platform WikiPathways model in MINERVA

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