1. Get miRNA

Returns miRNAs data with project related connections.

1.1. CURL sample

$ curl 'https://minerva-service.lcsb.uni.lu/minerva/api/projects/empty/miRnas:search?query=hsa-miR-125a-3p' -i -X GET

1.2. Path Parameters

Table 1. /api/projects/{projectId}/miRnas:search
Parameter Description

projectId

project identifier

1.3. Response Fields

Path Type Description

[].id

object

identifier of the mirna

[].name

string

name

[].targets

array<Target>

list of targets

[].targets[].name

string

target name

[].targets[].references

array<Reference>

list of target references

[].targets[].targetElements

array<object>

list of elements on the map associated with this target

[].targets[].targetParticipants

array<object>

list of identifiers associated with this target

1.4. Sample Response

[ {
  "name" : "hsa-miR-125a-3p",
  "id" : "hsa-miR-125a-3p",
  "targets" : [ {
    "name" : "FYN",
    "targetParticipants" : [ {
      "link" : "https://www.genenames.org/cgi-bin/gene_symbol_report?match=FYN",
      "type" : "HGNC_SYMBOL",
      "resource" : "FYN",
      "id" : 0,
      "annotatorClassName" : ""
    } ],
    "references" : [ {
      "link" : "https://www.ncbi.nlm.nih.gov/pubmed/23606749",
      "article" : {
        "title" : "microRNA-125a-3p reduces cell proliferation and migration by targeting Fyn.",
        "authors" : [ "Ninio-Many L", " Grossman H", " Shomron N", " Chuderland D", " Shalgi R." ],
        "journal" : "Journal of cell science",
        "year" : 2013,
        "link" : "https://www.ncbi.nlm.nih.gov/pubmed/23606749",
        "pubmedId" : "23606749",
        "citationCount" : 38
      },
      "type" : "PUBMED",
      "resource" : "23606749",
      "id" : 0,
      "annotatorClassName" : ""
    } ],
    "targetElements" : [ ]
  }, {
    "name" : "GPC4",
    "targetParticipants" : [ {
      "link" : "https://www.genenames.org/cgi-bin/gene_symbol_report?match=GPC4",
      "type" : "HGNC_SYMBOL",
      "resource" : "GPC4",
      "id" : 0,
      "annotatorClassName" : ""
    } ],
    "references" : [ {
      "link" : "https://www.ncbi.nlm.nih.gov/pubmed/22644326",
      "article" : {
        "title" : "MicroRNA-125a inhibits cell growth by targeting glypican-4.",
        "authors" : [ "Feng C", " Li J", " Ruan J", " Ding K." ],
        "journal" : "Glycoconjugate journal",
        "year" : 2012,
        "link" : "https://www.ncbi.nlm.nih.gov/pubmed/22644326",
        "pubmedId" : "22644326",
        "citationCount" : 11
      },
      "type" : "PUBMED",
      "resource" : "22644326",
      "id" : 0,
      "annotatorClassName" : ""
    } ],
    "targetElements" : [ ]
  }, {
    "name" : "RHOA",
    "targetParticipants" : [ {
      "link" : "https://www.genenames.org/cgi-bin/gene_symbol_report?match=RHOA",
      "type" : "HGNC_SYMBOL",
      "resource" : "RHOA",
      "id" : 0,
      "annotatorClassName" : ""
    } ],
    "references" : [ {
      "link" : "https://www.ncbi.nlm.nih.gov/pubmed/23525486",
      "article" : {
        "title" : "MiRNA-125a-3p is a negative regulator of the RhoA-actomyosin pathway in A549 cells.",
        "authors" : [ "Huang B", " Luo W", " Sun L", " Zhang Q", " Jiang L", " Chang J", " Qiu X", " Wang E." ],
        "journal" : "International journal of oncology",
        "year" : 2013,
        "link" : "https://www.ncbi.nlm.nih.gov/pubmed/23525486",
        "pubmedId" : "23525486",
        "citationCount" : 23
      },
      "type" : "PUBMED",
      "resource" : "23525486",
      "id" : 0,
      "annotatorClassName" : ""
    } ],
    "targetElements" : [ ]
  } ]
} ]

2. Get suggested miRNA queries

Get list of suggested miRNA queries in the context of the project.

2.1. CURL sample

$ curl 'https://minerva-service.lcsb.uni.lu/minerva/api/projects/empty/miRnas/suggestedQueryList' -i -X GET

2.2. Path Parameters

Table 2. /api/projects/{projectId}/miRnas/suggestedQueryList
Parameter Description

projectId

project identifier

2.3. Response Fields

Path Type Description

[]

array<string>

list of suggested mirna queries

2.4. Sample Response

[ ]