1. Get chemical

Returns chemicals data with project related connections.

1.1. CURL sample

$ curl 'https://minerva-service.lcsb.uni.lu/minerva/api/projects/TEST_PROJECT/chemicals:search?query=stilbene%20oxide' -i -X GET

1.2. Path Parameters

Table 1. /api/projects/{projectId}/chemicals:search
Parameter Description

projectId

project identifier

1.3. Response Fields

Path Type Description

[].id

object

identifier of the chemical

[].name

string

name

[].description

string

description

[].synonyms

array<string>

list of synonyms

[].references

array<Reference>

list of references

[].targets

array<Target>

list of targets

[].targets[].name

string

target name

[].targets[].references

array<Reference>

list of target references

[].targets[].targetElements

array<object>

list of elements on the map associated with this target

[].targets[].targetParticipants

array<object>

list of identifiers associated with this target

[].directEvidence

string

direct evidence

[].directEvidenceReferences

array<Reference>

list of references

1.4. Sample Response

[ {
  "name" : "stilbene oxide",
  "references" : [ {
    "link" : "http://id.nlm.nih.gov/mesh/C025906",
    "type" : "MESH_2012",
    "resource" : "C025906",
    "id" : 0,
    "annotatorClassName" : ""
  } ],
  "description" : null,
  "synonyms" : [ "stilbene oxide, (cis)-isomer", "stilbene oxide, (trans)-isomer", "stilbene oxide, trans-", "stilbene oxide, (2S-trans)-isomer", "stilbene oxide, (2R-trans)-isomer", "trans-stilbene oxide", "stilbene oxide, trans-(+-)-isomer" ],
  "id" : {
    "link" : "http://id.nlm.nih.gov/mesh/C025906",
    "type" : "MESH_2012",
    "resource" : "C025906",
    "id" : 0,
    "annotatorClassName" : ""
  },
  "directEvidenceReferences" : [ ],
  "directEvidence" : null,
  "targets" : [ {
    "name" : "GSTA4",
    "targetParticipants" : [ {
      "link" : "https://www.genenames.org/cgi-bin/gene_symbol_report?match=GSTA4",
      "type" : "HGNC_SYMBOL",
      "resource" : "GSTA4",
      "id" : 0,
      "annotatorClassName" : ""
    } ],
    "references" : [ {
      "link" : "https://www.ncbi.nlm.nih.gov/pubmed/16510128",
      "article" : {
        "title" : "Status of antioxidant defense system and expression of toxicant responsive genes in striatum of maneb- and paraquat-induced Parkinson's disease phenotype in mouse: mechanism of neurodegeneration.",
        "authors" : [ "Patel S", " Singh V", " Kumar A", " Gupta YK", " Singh MP." ],
        "journal" : "Brain research",
        "year" : 2006,
        "link" : "https://www.ncbi.nlm.nih.gov/pubmed/16510128",
        "pubmedId" : "16510128",
        "citationCount" : 58
      },
      "type" : "PUBMED",
      "resource" : "16510128",
      "id" : 0,
      "annotatorClassName" : ""
    } ],
    "targetElements" : [ {
      "id" : 678,
      "modelId" : 279,
      "type" : "ALIAS"
    }, {
      "id" : 679,
      "modelId" : 278,
      "type" : "ALIAS"
    } ]
  }, {
    "name" : "GSTP1",
    "targetParticipants" : [ {
      "link" : "https://www.genenames.org/cgi-bin/gene_symbol_report?match=GSTP1",
      "type" : "HGNC_SYMBOL",
      "resource" : "GSTP1",
      "id" : 0,
      "annotatorClassName" : ""
    } ],
    "references" : [ {
      "link" : "https://www.ncbi.nlm.nih.gov/pubmed/23721876",
      "article" : {
        "title" : "The Nrf2/SKN-1-dependent glutathione S-transferase π homologue GST-1 inhibits dopamine neuron degeneration in a Caenorhabditis elegans model of manganism.",
        "authors" : [ "Settivari R", " VanDuyn N", " LeVora J", " Nass R." ],
        "journal" : "Neurotoxicology",
        "year" : 2013,
        "link" : "https://www.ncbi.nlm.nih.gov/pubmed/23721876",
        "pubmedId" : "23721876",
        "citationCount" : 24
      },
      "type" : "PUBMED",
      "resource" : "23721876",
      "id" : 0,
      "annotatorClassName" : ""
    }, {
      "link" : "https://www.ncbi.nlm.nih.gov/pubmed/17190945",
      "article" : {
        "title" : "Herbicide exposure modifies GSTP1 haplotype association to Parkinson onset age: the GenePD Study.",
        "authors" : [ "Wilk JB", " Tobin JE", " Suchowersky O", " Shill HA", " Klein C", " Wooten GF", " Lew MF", " Mark MH", " Guttman M", " Watts RL", " Singer C", " Growdon JH", " Latourelle JC", " Saint-Hilaire MH", " DeStefano AL", " Prakash R", " Williamson S", " Berg CJ", " Sun M", " Goldwurm S", " Pezzoli G", " Racette BA", " Perlmutter JS", " Parsian A", " Baker KB", " Giroux ML", " Litvan I", " Pramstaller PP", " Nicholson G", " Burn DJ", " Chinnery PF", " Vieregge P", " Slevin JT", " Cambi F", " MacDonald ME", " Gusella JF", " Myers RH", " Golbe LI." ],
        "journal" : "Neurology",
        "year" : 2006,
        "link" : "https://www.ncbi.nlm.nih.gov/pubmed/17190945",
        "pubmedId" : "17190945",
        "citationCount" : 22
      },
      "type" : "PUBMED",
      "resource" : "17190945",
      "id" : 0,
      "annotatorClassName" : ""
    } ],
    "targetElements" : [ ]
  } ]
} ]

2. Get suggested chemical queries

Get list of suggested chemical queries in the context of the project.

2.1. CURL sample

$ curl 'https://minerva-service.lcsb.uni.lu/minerva/api/projects/TEST_PROJECT2/chemicals/suggestedQueryList' -i -X GET

2.2. Path Parameters

Table 2. /api/projects/{projectId}/chemicals/suggestedQueryList
Parameter Description

projectId

project identifier

2.3. Response Fields

Path Type Description

[]

array<string>

list of suggested chemical queries

2.4. Sample Response

[ "1,2,3-Propanetriol", "1,2,3-Trihydroxypropane", "Glycerin", "Glycerine", "Glycerol", "Pregn-4-ene-3,20-dione", "Pregnenedione", "Progesterone", "Progesterone, (13 alpha,17 alpha)-(+-)-Isomer", "Progesterone, (17 alpha)-Isomer", "Progesterone, (9 beta,10 alpha)-Isomer" ]