1. Get chemical

Returns chemicals data with project related connections.

1.1. CURL sample

$ curl 'https://minerva-service.lcsb.uni.lu/minerva/api/projects/TEST_PROJECT/chemicals:search?query=stilbene%20oxide' -i -X GET

1.2. Path Parameters

Table 1. /projects/{projectId}/chemicals:search
Parameter Description

projectId

project identifier

1.3. Response Fields

Path Type Description

[].id

object

identifier of the chemical

[].name

string

name

[].description

string

description

[].synonyms

array<string>

list of synonyms

[].references

array<Reference>

list of references

[].targets

array<Target>

list of targets

[].targets[].name

string

target name

[].targets[].references

array<Reference>

list of target references

[].targets[].targetElements

array<object>

list of elements on the map associated with this target

[].targets[].targetParticipants

array<object>

list of identifiers associated with this target

[].directEvidence

string

direct evidence

[].directEvidenceReferences

array<Reference>

list of references

1.4. Sample Response

[ {
  "description" : null,
  "directEvidence" : null,
  "directEvidenceReferences" : [ ],
  "id" : {
    "id" : 0,
    "relationType" : "BQ_BIOL_IS_DESCRIBED_BY",
    "dataType" : "MESH_2012",
    "resource" : "C025906",
    "annotator" : null,
    "prefixedIdentifier" : "mesh:C025906"
  },
  "name" : "stilbene oxide",
  "references" : [ {
    "annotatorClassName" : "",
    "id" : 0,
    "link" : "http://id.nlm.nih.gov/mesh/C025906",
    "resource" : "C025906",
    "type" : "MESH_2012"
  } ],
  "synonyms" : [ "stilbene oxide, (cis)-isomer", "stilbene oxide, (trans)-isomer", "stilbene oxide, trans-", "stilbene oxide, (2S-trans)-isomer", "stilbene oxide, (2R-trans)-isomer", "stilbene oxide, trans-(+-)-isomer", "trans-stilbene oxide" ],
  "targets" : [ {
    "name" : "GSTA4",
    "references" : [ {
      "annotatorClassName" : "",
      "article" : {
        "id" : 0,
        "title" : "Status of antioxidant defense system and expression of toxicant responsive genes in striatum of maneb- and paraquat-induced Parkinson's disease phenotype in mouse: mechanism of neurodegeneration.",
        "authors" : [ "Patel S", " Singh V", " Kumar A", " Gupta YK", " Singh MP." ],
        "journal" : "Brain research",
        "year" : 2006,
        "link" : "https://www.ncbi.nlm.nih.gov/pubmed/16510128",
        "pubmedId" : "16510128",
        "citationCount" : 57,
        "stringAuthors" : "Patel S,  Singh V,  Kumar A,  Gupta YK,  Singh MP."
      },
      "id" : 0,
      "link" : "https://www.ncbi.nlm.nih.gov/pubmed/16510128",
      "resource" : "16510128",
      "type" : "PUBMED"
    } ],
    "targetElements" : [ {
      "id" : 110,
      "modelId" : 77,
      "type" : "ALIAS"
    }, {
      "id" : 112,
      "modelId" : 78,
      "type" : "ALIAS"
    } ],
    "targetParticipants" : [ {
      "annotatorClassName" : "",
      "id" : 0,
      "link" : "https://www.genenames.org/cgi-bin/gene_symbol_report?match=GSTA4",
      "resource" : "GSTA4",
      "type" : "HGNC_SYMBOL"
    } ]
  }, {
    "name" : "GSTP1",
    "references" : [ {
      "annotatorClassName" : "",
      "article" : {
        "id" : 0,
        "title" : "The Nrf2/SKN-1-dependent glutathione S-transferase π homologue GST-1 inhibits dopamine neuron degeneration in a Caenorhabditis elegans model of manganism.",
        "authors" : [ "Settivari R", " VanDuyn N", " LeVora J", " Nass R." ],
        "journal" : "Neurotoxicology",
        "year" : 2013,
        "link" : "https://www.ncbi.nlm.nih.gov/pubmed/23721876",
        "pubmedId" : "23721876",
        "citationCount" : 23,
        "stringAuthors" : "Settivari R,  VanDuyn N,  LeVora J,  Nass R."
      },
      "id" : 0,
      "link" : "https://www.ncbi.nlm.nih.gov/pubmed/23721876",
      "resource" : "23721876",
      "type" : "PUBMED"
    }, {
      "annotatorClassName" : "",
      "article" : {
        "id" : 0,
        "title" : "Herbicide exposure modifies GSTP1 haplotype association to Parkinson onset age: the GenePD Study.",
        "authors" : [ "Wilk JB", " Tobin JE", " Suchowersky O", " Shill HA", " Klein C", " Wooten GF", " Lew MF", " Mark MH", " Guttman M", " Watts RL", " Singer C", " Growdon JH", " Latourelle JC", " Saint-Hilaire MH", " DeStefano AL", " Prakash R", " Williamson S", " Berg CJ", " Sun M", " Goldwurm S", " Pezzoli G", " Racette BA", " Perlmutter JS", " Parsian A", " Baker KB", " Giroux ML", " Litvan I", " Pramstaller PP", " Nicholson G", " Burn DJ", " Chinnery PF", " Vieregge P", " Slevin JT", " Cambi F", " MacDonald ME", " Gusella JF", " Myers RH", " Golbe LI." ],
        "journal" : "Neurology",
        "year" : 2006,
        "link" : "https://www.ncbi.nlm.nih.gov/pubmed/17190945",
        "pubmedId" : "17190945",
        "citationCount" : 21,
        "stringAuthors" : "Wilk JB,  Tobin JE,  Suchowersky O,  Shill HA,  Klein C,  Wooten GF,  Lew MF,  Mark MH,  Guttman M,  Watts RL,  Singer C,  Growdon JH,  Latourelle JC,  Saint-Hilaire MH,  DeStefano AL,  Prakash R,  Williamson S,  Berg CJ,  Sun M,  Goldwurm S,  Pezzoli G,  Racette BA,  Perlmutter JS,  Parsian A,  Baker KB,  Giroux ML,  Litvan I,  Pramstaller PP,  Nicholson G,  Burn DJ,  Chinnery PF,  Vieregge P,  Slevin JT,  Cambi F,  MacDonald ME,  Gusella JF,  Myers RH,  Golbe LI."
      },
      "id" : 0,
      "link" : "https://www.ncbi.nlm.nih.gov/pubmed/17190945",
      "resource" : "17190945",
      "type" : "PUBMED"
    } ],
    "targetElements" : [ ],
    "targetParticipants" : [ {
      "annotatorClassName" : "",
      "id" : 0,
      "link" : "https://www.genenames.org/cgi-bin/gene_symbol_report?match=GSTP1",
      "resource" : "GSTP1",
      "type" : "HGNC_SYMBOL"
    } ]
  } ]
} ]

2. Get suggested chemical queries

Get list of suggested chemical queries in the context of the project.

2.1. CURL sample

$ curl 'https://minerva-service.lcsb.uni.lu/minerva/api/projects/TEST_PROJECT2/chemicals/suggestedQueryList' -i -X GET

2.2. Path Parameters

Table 2. /projects/{projectId}/chemicals/suggestedQueryList
Parameter Description

projectId

project identifier

2.3. Response Fields

Path Type Description

[]

array<string>

list of suggested chemical queries

2.4. Sample Response

[ "1,2,3-Propanetriol", "1,2,3-Trihydroxypropane", "Glycerin", "Glycerine", "Glycerol", "Pregn-4-ene-3,20-dione", "Pregnenedione", "Progesterone", "Progesterone, (13 alpha,17 alpha)-(+-)-Isomer", "Progesterone, (17 alpha)-Isomer", "Progesterone, (9 beta,10 alpha)-Isomer" ]